Competency information
Details
Compare workflows specifically for the requirements of NGS data.
Considerations
Data handling and data governance
- Workflows for next generation analysis.
- Data quality in next generation data.
- Presenting next generation data.
- Models of use of next generation technology within the NHS.
- Issues of patient consent and what analyses are ethical.
Relevant learning outcomes
| # | Outcome |
|---|---|
| # 1 | Outcome Use the tools required for each stage of NGS data analysis. |
| # 2 | Outcome Analyse NGS data through base calling, filtering, quality control, data validation and read mapping (eukaryotic and prokaryotic) in a clinical setting.(The clinical setting could include Clinical Genetics, Microbiology, Virology, Clinical Diagnostics, for example targeted oncology treatments/classical genetics.) |
| # 3 | Outcome In partnership with the relevant clinical specialist interpret NGS data through SNP, InDEL and CNV analysis, and relate to phenotypic data. |